The loss of night vision is perfectly normal when the human eye is exposed to bright light. The eye does not suffer damage as the intensity of the LCD backlight is well below any potentail harm levels. You can suffer eye strain/fatigue, but that is often due to the less than great optics used in some viewfinder assemblies.
There are two common countermeasures to the issue of night vision loss due to EVF illumination....
Operate the electronic viewfinder in a low brightness mode, if such is available. Reduce the brightness level as much as possible whilst still being able to see the image detail.
Operate the thermal camera in a Red and Black monochrome mode with low intensity red instead of white light. This mode is available on some professional thermal imaging scopes and maritime thermal imagers. Red light has less of an effect on the users night vision.
If your particular thermal camera/scope offers neither option, you could try buying some Red filter 'Gels' that are used on theatre stage lighting. They are a thin plastic that comes in various colours. You could use one or more layers of the red gel sheet placed in the electronic viewfinders optical path at a convenient point.
Remember... When operating in darkness, it is best to operate a thermal scope at its lowest backlight brightness that still provides a useable image.
The military surveillance scopes also include a rubber iris in the EVF eye cup that only opens when the scope is pressed against the users face. This is nothing to do with the users night vision management...... it is to ensure that the users face is fully coupled to the eye cup, so avoiding light leakage that makes them an easy target for a sniper.
I attach some example images from the FLIR HM307 showing the black hot, white hot and Marine Red night palette.
Fraser