It would help if you could describe your setup.
Which input signal, which FFT settings, time base, memory, etc....
I tried different setup, that i will describe in detail later, but i can say in advance the issue is not related to FFT number of points, since i changed them many times together with sample rate, or other scope settings.
I also disabled history and every kind of measurements, without solving the problem.
The tested signals were the output of my HF magnetic loop antenna and my SDG2042X generator with FM modulated carriers around 100MHz.
Easiest way to show the problem would be to make a video of the screen (and probably i will do), anyway try to imagine to see a very fast update rate FFT "disrupted" here and there by a remarkably slower update period that last up to some seconds.
The phenomenon does not seem to be related to FFT (or other) settings, to me it looks like some software task "disturbs" FFT analysis process.
Of course FW is the latest available on the site (at least last monday, when I received the instrument).