I'll be damned, typokbnig is on to something I never considered - WiFi interference!
I have a high power mesh network running in my home, I have been seeing a consistent 1+ mV noise on my scope, oddly, only on channel 2 but none of the others. I was about to send the scope back to Rigol for repair.
When I powered the scope up tonight, channel 2 became the ghost channel that would always come on when I press Auto (which did not surprise me as I know about the Channel 2 noise issue). Thanks to typoknig's suggestion, I powered down the mesh satellite closest to the scope, and guess what, the noise is gone, and no more ghost channel issue!
I am not surprised about the interference, I should have known better, but I am surprised that it only manifested in a single channel, perhaps it is less shielded than the others. Anyway, armed with this new finding, I will leave the WiFi satellite off and run a full calibration this evening.
Back to skander36's comment, I have supplied signal of varying voltages to channel one up to 5V p-p, and I have not been able to get any ghost channel to come on. So the suggestion of trying it outside of WiFi range and LED lights may well worth a try and see if it makes any difference. However, like you, I have not seen this issue in firmware 04.08, so I would agree Rigol might have lowered the turn-on threshold just enough for this problem to manisfest in our scopes.
Just finished a self cal, noise level is consistent across all 4 channels, right at around 303uV (at 2mV/div) with +/- 3 uV across channels.