I don't have experience with this particular Agilent piece, but for the other 2 I have looked at, the best is to pull it open, look at the existing fan reference and find something comparable from one of the quiet PC fan vendors (Noctua, Gelid...).
You could also just drop a series resistance to slow the fan down.
As far as the fan connector, I found on the Agilent equipment I have that it uses 2-pin fan connectors that are mechanically compatible with PC 3-pin fans (with the yellow tach output). However, the pinout is reversed (black/red). I found it easier to keep the PC 3-pin connector, extract the pins inside the connector and reshuffle them so that they are compatible with the Agilent pinout. This way, you don't have to splice or cut your original fan.
Note that out of the 2 pieces I have, one is 5V, the other 12V, with the same connector, so be careful.