New options seem not to be new options but new bundles:
D3000AERA - DSOX3AERO, DSOX3VID, DSOX3MASK, DSOXT3FRA and DSOX3ADVMATH
D3000AUTA - DSOX3AUTO, DSOX3FLEX, DSOX3MASK, DSOXT3SENSOR, DSOXT3NRZ, DSOXT3CXP, DSOXT3FRA and DSOX3ADVMATH
D3000GENA - DSOX3EMBD, DSOX3COMP, DSOX3AUDIO, DSOX3VID, DSOX3MASK, DSOXT3UPD, DSOXT3FRA and DSOX3ADVMATH
D3000PWRA - DSOX3PWR, DSOXT3UPD, DSOX3MASK, DSOXT3FRA and DSOX3ADVMATH
D3000BDLA - Ultimate bundle (whatever that is)
D3000NFCA - NFC replacement
EDIT:
Also my scope is not responding to VNC anymore, only remote is one in Web browser
On a first boot after upgrade my scope didn't have VNC server active, so I couldn't connect with external RealVNC Viewer. Today, it works, so I guess either i made some user error (not very likely, all other net comm with scope on same IP was working, internal web pages, SCPI, even built in HTML5 remote control), or maybe on a first boot it was still shuffling things around (it does say "Finishing installation") and VNC server didn't start for some reason.
But now after second reboot it works normally.