Well, yes, for voltage dividers temperature gradient is relevant rather than the temperature per se, but that's not the case for other components, e.g. shunt resistors.
I also don't think air speed itself needs to be taken into account when calibrating. Presumably the fan controller would adjust air speed so that a target temperature within the chassis is maintained, regardless of heat generation and ambient temperature, i.e. for warmer ambient air, more air will be pulled which should then also equalize the heat being carried away from components (same for more humid air).
Clearly a (controlled) fan would not completely eliminate warm-up time. The fan ought to start immediately at high speed in order to i) overcome friction and ii) assure that a mixed air reaches the sensor(s) and (perhaps quickly) slow to the appropriate speed, but never stop (so that the sensors aren't isolated).
The chassis-internal target temperature of a controlled-fan equipped device (necessarily) would be higher than any expected ambient temperature, which might accelerate drift or aging of components and hence be considered undesirable. Further the control-loop will cause some fluctuation in the chassis-internal temperature depending on load (e.g. due to high-speed measurements or high-current across a shunt resistor) which might be worse then using a high, steady air flow when ambient temperature is stable and within specified range. I wonder if it has been investigated whether that's the case or the engineers just chose the simple, cheap solution ...