I heard its nasty and i heard from people that work no spark jobs using beryllium copper hammers that their a big hazard if you decide to clean it up with a sander. They use them because their non sparking, but when you use copper like a steel hammer head its going to deform no matter what kind of alloy you use.
With a normal copper hammer you can clean it up on a belt sander or whatever with little risk, but if you do it with a beryllium copper hammer its a bad thing.
https://www.amazon.co.uk/Ega-Master-Beryllium-Copper-Hammer-Sparking/dp/B07MSFNBLBBut in general brass dust is bad too. Yes normal brass if pretty bad if you sand it (often wet sanded). You don't hear much about sanding brass because it polishes up really nicely with brasso or whatever.
As a general case, anything you read about 'metal fume fever' applies to the base metal powder, since basically under normal conditions all metal fume exposures are actually particle exposures (it condenses, you don't actually get any metal in gaseous form), based on what OSHA says. So if there is any air float component, the toxicity is pretty much the same.
The only EMC BeCu thing I heard about is RF fingers, in addition to the connectors pins that everyone knows about.
The only waveguide type I could think of would be the corrugated kind.
https://patents.google.com/patent/US4429290A/enThis catalog claims its available to order:
https://www.microtech-inc.com/Products/WRD-350-Waveguide-Flexible-Double-Ridged/p3s25/I don't think it makes sense to make a BeCu wave guide that's not a weird flexible one because the safety controls for manufacturing are expensive and wave guide is the type of component someone might actually modify in a lab, so you don't want to sell something you know can poison someone. Unless its ancient stuff where no one cared. The safety behind BeCu fabrication is taken seriously in the modern world, which makes it expensive.
Obviously be careful sanding brass because that would be my go to for making a waveguide, you can do very nice sanding and cutting and soldering work on brass and make a precision assembly without manufacturing difficulties (you can use a chisel even, or is this trick for bronze? never tried anyway). I recommend you do as much work as possible with tools that do not make fine dust or fumes, then do as much finishing work as possible wet/ventilated. If you are new to shop work, you will find that copper is irritating to work with, while brass is very pleasant.