The R10 is typically lower in demand compared to what many OEMs require. The emission tests follows CISPR25 and the DUT is supposed to operate during the test and you check all emissions (CAN, power etc) combined. You might need something to simulate communication from other ECUs to make the DUT fully operational.
CISPR25 does not explicitly mention CAN, its harness length or placement of the optical interface. For the conducted emissions test, be sure to use the short harness between the DUT and the LISNs as described for the voltage method in CISPR25. Using the longer harness for radiated emissions also for conducted can cause issues with CM around 40 MHz due to resonance. This also applies if you have a short harness for power and a long harness for CAN.