You see gain step change. Older firmware use one gain setting for measure reflect data. Last use auto gain (depend from measured level).
I suspect there may be a language problem. Attached, I am looking at S21 transmitted data. After installing firmware 220224, I will see the step.
No calibration has been performed at this time. The VNA will display the step as I have shown. This step is not the reflected data. Looking at the raw channel 0 integers, I do not see the step in the incident or reflected data.
What is this gain setting you are referring to? How do you calculate it? What are you actually changing? Output power of synthesizers based on frequency?
And difficult question where is more correct measure. If use one gain settings you not see step, but error also present (you see smooth data)
Use AGC allow better measure low level signals on reflect.
Please explain this AGC algorithm in detail. Again, what ever it is you are doing causes a problem when looking at the transmitted S21 data.
When connected to the PC, I expect the VNA to always send raw data.