I think it's fairly obvious what the general opinion is, from both end-users and professional design engineers. Both are likely to avoid FTDI in future, just in case their products end up containing chips that, through no fault of their own, are deemed as infringing by some piece of driver code.
At least if I design a Cypress, or Prolific, or Microchip part into my product, it's less likely to get wrecked by malware. It's a great shame, because as a general rule I like(d) FTDI products, but now I can't take the risk. FTDI might gain a short-term victory against counterfeiters, but it'll emerge from the battle with its brand in tatters and a suite of updated, more accurate copies to deal with.
Nobody wins here, and I won't be a pawn in someone else's IP dispute.