The causal effect may be the other way around. Here's a plausible explanation:
The +110V unregulated supply is used to create the +110V regulated supply. And the +110V regulated supply is used by the vertical deflection amp to drive the plates on the CRT. When Ch2 changes position vertically on the CRT, the vertical amp is going to change its current draw to do it. This will cause the unregulated +110V supply to fluctuate at the same time.
Thus far I'm not getting any results that show there is anything wrong with any of the vertical boards. When they are all disconnected from all of the rails, the jitter and loading issues are still present.
Now I do think from your waveform drawings and voltage readings that the unregulated +55V supply (TP159) might be loaded too much. The unregulated +110V (TP148) supply is probably ok. The fact that it's low and has a similar waveform is a side effect of TP159, namely TP158 equals TP159 plus the other half of the transformer winding that's common to both voltages.
It could also be the load is ok and filter cap C829 is in bad shape.
How is your +55V regulated (TP637) voltage and ripple? It's important becasue all the other regulated voltages are derived from it.
I am in the process of isolating the +55V completely right now. The only thing still connected to the +110V is the CRT, and I am under the impression that the CRT circuit is my main source of problems. The A & B sweep gen appears to be what is causing the large majority of the loading. Once I fully isolated it, the loading almost completely went away and the BR's no longer heated up.
However, now that I have the trigger board off, all the knobs on the bottom of the panel disconnected, A & B sweep isolated, and all the verticals isolated:
Regulated supplies: 121.5V; 54.99V; 14.99V; 6.78V, -8.02V ( so the 110V and 5V DC voltages are off)
All of the waveforms of the regulated supplies are a lot better, all being correct except for TP158, TP162, TP163 - they look like TP162 from the drawings I last uploaded.
Unregulated Supplies: 162.8V; 80.1V: 24.74V; 10.35V; 6.131V
R830, R728 both are getting fairly hot after a few minutes powered on.
R400, R834 both getting slightly warm.
Q838 seems OK temp wise, but I'm starting to think that either it's bad, or Q740 is bad. The 110V was not folded when I checked before isolating anything, but It's worth checking again now. The Vbe of Q740 was .5V, so I think it's likely good, but Q838 may be bad.
I have re-removed C603 and temporarily replaced it with a measured 2.4uF electrolytic, and I am now about to power on and see what changed now that I took that bastard out again. I had no idea that the ESR was that high!! the C measured at 2.6uF - it's a 20%, but I should have realized that Tek isn't going to use parts that are ACTUALLY anywhere near their rated tolerance limit. It is about 13% off, which should have been a red flag. Oh, the disadvantages to working on stuff late at night when I'm tired...
I still don't think it's the power supply, but I would check the above before moving on.
We will be finding out if there is anything wrong with the power supply very soon. My guess is that yes, there are power supply issues. If one cap is bad, then there are more bad caps and maybe bad transistors as well - such as Q838. Fun stuff.
It's a great learning opportunity for me, since I am rebuilding this scope from the supply up, and then am going to also calibrate it myself.
I have a STP 2145 A Double OCXO on the way that I am designing and building a board for, and then an enclosure and LiIon battery system so that it stays on 24/7, and I am about to order a few voltage standard ICs as well. Then to the cal gear. I'll have the engineering dept of the local college help me out with calibrations.