OSH Stencils sells some "L" shaped plastic thingies that can make an adjustable stencil "frame".
You place them on a table top, stick your board in the hole, tape them down, align the stencil to the board, tape it down... voila... adjustable stencil frame. You can also use pieces of PC board material or plastic that is the thickness of your PCB to make a stencil "frame".