The LT3045 has built in reverse input protection because the PNP output transistor has a high base-emitter breakdown voltage and its collector is isolated from the substrate. The LT3094 does not because the NPN output transistor has a low base-emitter breakdown voltage and its collector is not isolated from the substrate.
The only reason to have reverse input protection is if the input can be shorted, like with a crowbar circuit. Usually it is sufficient to put a power diode across the input-to-output to limit the reverse voltage across the regulator to a low value and this is commonly seen on 3-terminal linear regulators for exactly this purpose. For the LT3094, a big schottky diode should be used because of the substrate diode but may be this will not be enough.