You would do much better in eliminating most of all those ceramic filter caps and use a low ESR, low-profile standard aluminum electrolytic cap shunted by a single ceramic cap. on the input power and output power points. Adding a small (20 to 150uH) choke bypassed by a small low-profile electrolytic will further decouple the neg. output and would lower any remaining noise to almost nothing visible. If you add a filtering choke inductor take care to place it so it does not magnetically couple with the power switching inductor. This looks very easy since the picture of your board show the switching inductor is well magnetically shielded.
I was worried about ripple current in the electrolytics, which is why I shied away from them initially. If the ripple current is handled by the ceramics, that makes sense. Would the higher ESR of the electrolytics dampen the transmission line effects I was seeing?
The use of aluminium caps at 1MHz+ switchers have the problem that their ESL will get in your way, making them less effective. Even most polymer caps will become inductive at 1MHz+ frequencies and therefore less suited as output capacitor. The point in this design, as far as I am aware of, is to create V+/V- suitable for analog electronics. That means to ensure proper switch dampening. For that, ceramics are better suited than aluminium caps with this particular switcher.
Actually, you can buy aluminium and polymer caps for the higher frequencies, but they are more expensive. There is no need for high capacity values and therefore, again, ceramics are a better choice, even if you need a couple more of them.
The input capacitor has some slightly different use in this design. With a battery fed system, your input power supply has rather high impedance. The switch noise will be taken by the ceramics, but the bulk-impedance depends on the polymer cap, such that your battery is loaded quite evenly at a rather constant DC current level. A "good" aluminium cap has an ESR in the range of 150..300mOhm; your battery is in the order of 100..500mOhm and a polymer cap is in the order of 30..80mOhm. Ceramics have the very steep V*C product problem whereas polymer caps are less dependent on it, so it is the better choice.
Loop inductance of the feedback node is the most sensitive part of any power supply. I think it would be better to shift the c6-c9 down to be inline with r1 and r2. Also I assume that there is a via terminating r1 to gnd.
The high-current path is mainly perpendicular to the feedback node so the problem is rather small. I do agree that the feedback connection can be pulled back a bit farther from under the first cap to reduce the potential coupling there.