Depends where you get the work done. Most of the quick turn assembly places I know will just use IPC class 2 standards (which is what the a majority of the people want) unless you say not too. It is just cheaper for them to assume and it is in their workflow so deviating from it will cause more money and harm. So, to answer your question, it probably will not make that big of a difference unless the shop you use does not pride themselves in high quality standards. In most cases, if you put something in your notes that conflicts, they will ask you about it.
If you use a big shop, I can see how they would want to use class 1 standards. In that case, those notes matter a lot.