An high impedance input that can be used inline with a standard 1 M scope input is kind of difficult, as there is usually one very little spare capacitance for compensation. So the input would need to be very high impedance. Many DSOs also already include a kind of counter function. Some of the older analog scopes have an analog signal output, that could be used for the counter.
The more likely way would be an extra output to monitor the signal after an high impedance input stage (e.g. JFET based buffer, just like in most scope inputs) of the counter.
To make it a full counter instrument the input section is kind of still missing, but it's kind of OK to have this on a second board. It might be interesting for someone with good RF knowledge to design such an input stage, as the digital part looks really promising.