If you look carefully at the resistors, you can see that decade 2 has 2.2k ohm resistors. Decades 3 through 10 have 480 ohm resistors.
As a working assumption, I believe that it is necessary to accurately measure output resistance of dial setting 099999X and adjust the lowest first decade so that the the resistance of dial setting 1000000 has exactly the same resistance as dial setting 099999X. Then each step of the first decade must be adjusted to this resistance.
The other method would be to shunt the second decade so that dial setting 099999X becomes exactly 10k ohms.
These are just educated guesses at this point.
Measuring the divider with a DMM7510, 100K is high by 35ppm. The DMM7510 100K total uncertainty is 33ppm so the DMM7510 is not good enough to know exactly what the 100K resistance actually is. I need either a better DMM or a 100K resistor with very tight uncertainty to make a divider/bridge for accurately determining what the resistance is.
Thinking ahead, it would be good to have an ESI SR1010 that has 10K steps and have that calibrated to a very tight uncertainty.