Hi Ichan,
I guess you must be getting fairly frustrated by now.
I think you're trying to do something that can't be done - at least not as it's currently set up.
My suggestion is that you get from NeoDen the same copy of the software application that TankSparks is using. Once you've tried it with the same software as TankSparks, if you get a great success you'll know it was in your particular Software version. If you get the same unsatisfactory result with the TankSparks software version, using the same method, you've been using to date, you'll know to look at the Hardware, or it's in you usage of the software with that PCB / Panel.
If you check TheSteve's post 'reply # 601 6th March' you'll see the N4 is definitely capable of the results you're seeking, when the right combination is used.
BTW - how many of those blank PCBs do you have on hand? The sooner you can get your hands on some boards with Fids the better I think.
Peter
did you try my method?
Yes, but the problem is still - verified by vision align.