So I had eclipse indigo running happily for programming the atmel 328p on my arduino board using avrdude. I go and install Quartus 2 software and the eclipse SDK that comes with it and boom, I've lost my old eclipse set up and add-ons.
Alternatively on my linux side, the same thing happened when I installed the eclipse add-on for programming Java on my android device, lost my AVRDude on my linux boot as well.
Why can't these add-ons just get along?