If you only have about a centimetre of trace,get a very bright light & a magnifying glass.
You will probably find it by eye,if it is a trace you can see,not inside a multilayer board.
Are you completely sure the short isn't at the micro pin itself?Or inside the device?
I'm not sure. How can you test for that?
It's a simple trace that runs from the micro pin to the module pin, 1 to 1.5 centimeters. There are ground planes underneath each device, so I was thinking that the short is between pad to the gnd plane hidden from view (5mil space). But it could be a short in one of the devices. is there a way to rule that out before lifting pads or removing parts?
The visual check can pick up a lot of things--just because something seems the most likely shouldn't rule out checking for other things.
You did say "pin" so I assume the devices are normal SMDs with visible pins.
Again ,using the lamp & glass,you should be able to desolder the suspect pins,lift them ever so slightly ,& put a bit of thin paper (or even better,Mylar),under the pin,then check again for shorts.
If this is not practical,the suggestion, made in one of the other posts,of cutting the track seems the best option.