Sometimes the datasheet specifies the pins as individual, and elsewhere specifies which pins are tied together internally (usually by listing the pins beside the respective terminals in the circuit diagram, or putting terminals and pins in a table to the same effect).
How you go from here to there, in any particular EDA tool, is up to you.
Some allow you to assign multiple footprint pins to a given schematic pin. Multisim is such a tool; Altium/CS is not.
If you cannot, then you can solve it any other way you like.
I like to make this specific footprint by numbering the pads according to the schematic symbol (which itself might be numbered based on something else, like the SPICE model if applicable). All pads of a given name will be placed in the same net (and won't have collision errors), so all the shapes which make up the drain pad are numbered the same.
The footprint isn't very reusable this way, but it isn't very reusable anyway, on account of the huge pad shorting everything together. There might be some devices that use pins 1-4 independently, but who cares, and if you need to use one you can just make a variant of the footprint for it and be done.
Alternately, you can number pads individually, and enumerate all the pins on the schematic. This makes for ugly symbols, but is the most specific (the schematic tells you that this part has lots of pins, and that they're all connected together externally and internally).
Tim