I'm talking about regulation 471-12-01
http://www.theiet.org/publishing/wiring-regulations/mag/2006/18-portablesupply.cfm?type=pdf
http://books.google.co.uk/books?id=Z432pJcac6QC&pg=PA80&lpg=PA80&dq=Regulation+471-12-01&source=bl&ots=bbTjcRH3vG&sig=eo84q5YnT6LuFqPNxMLT62HYrBo&hl=en&ei=Dgw_TevyA9-ShAf37aSLCg&sa=X&oi=book_result&ct=result&resnum=4&ved=0CDQQ6AEwAw#v=onepage&q=Regulation%20471-12-01&f=false
All it means it that if more than one appliance is running from an isolation transformer, the exposed metal parts need to be bonded together to prevent them floating at dangerous potentials.
Google Books link doesn't work, but the PDF states that 'there should be no connection between the separated circuit and any other circuit, or to earth'. I believe this would include connecting a scope connected to an isolation transformer to a DUT on a different isolation transformer. So it doesn't appear to be that the proposed isolated workbench would comply with this.
No bodge job, it's recommended that the chassis of all equipment running off an isolation transformer be connected together so there's no risk of them floating at different potentials. It's written down in the IEE regulations as protection against electrical shock using a separated supply. The idea is that if all metal parts are bonded together and the power supply is isolated from earth, there's no chance of receiving a shock. It's pretty safe because there would need to be a triple fault in order for you to be shocked: the insulation would have to fail on both appliances as well as the bonding between them. Using an earth bonded 'scope run directly from the mains is more risky because there only needs to be two faults to receive a deadly shock: insulation and earth bond failure.
Triple fault? You connect the scope ground to some potentially dangerous potential in your DUT (eg. live wire), this is safe, because everything is floating. Now a fault occurs and the neutral wire in the isolated DUT gets connected to something you touch (eg. case): you get shocked, since you're likely to be touching the scope ground somehow (all exposed metal on most test equipment is connected to ground). If the scope had been grounded, there would have been sparks and a blown fuse as soon as you clipped it to the live wire, and the ground conductor would have carried all current and the GFI/RCD would trip. Isolation transformer does not make the voltages less dangerous, it just makes it safe to touch one of the wires at a time. If you somehow get connected to the second wire, you can still get shocked.
The issue with ground is that there tends to be lots of grounded stuff around, for example piping for heating and water, some floors, workbenches, almost all large fixed metal objects, so it's quite likely that you connect your floating ground to earth ground somehow. From the signal integrity front, there is usually something like 1000pF of capacitance from your scope to ground (in your average lab, obviously less if you suspend it in mid-air somehow), so if there is any connection between your DUT and ground, this can give some nasty coupling.
Regarding isolation transformers and ground: some do connect the ground conductor, some don't. Connecting the scope to the former won't do any harm, but it won't do much good either. It takes a double fault for class I equipment to shock someone, so the effort is probably better spent in improving safety some other way. Connecting equipment like scopes to the latter can be dangerous, and is recommended against by the manufacturers. I still don't see how cutting the ground connection would improve safety, the only advantage is that it can be convenient for measurements to non-isolated circuits without proper tools like differential probes, and that's precisely the most dangerous application.