Hi,
Which auto box do you have ? Is a CVT series ? (k111-k114) these models require regular fluid change and a re-learn procedure after that is done.
For the pre ctv boxes you can use the toyota OBD diagnostics software (techstream) to view the solenoid states and what the computer is telling them to do, or if you a have a good enough scanner that can show the same.
if you just did a service and as a result you have new symptoms then you are on the right track. I had a auto rav4 on pre ctv that never in it's life had a fluid change, we did the first one and i had symptoms to yours (shifting changed) and toyota tech told me to do it again as draining the pan only removes about half the actual fluid and the rest is stored in valves and the primary pump and that needs clean fluid too. I can confirm this is most definatly the case on CVT base units as the manual actually specifies two fluid changes (first is drain and fill with toyota "atf cleaner" , warm up and short drive then drain and refill with final fluid, this is also mentioned in techstream software)
I am doubting the ecm at fault here as the fluid change also changed the symptoms so it will more be old fluid in the system still or actual solenoids have stuck due to contaminates
darkspr1te