Hi Dave,
I believe that you were measuring capacitance with Agilent Multimeter wrong. The LCR meter is charging up the cap, and after that you measure it with multimeter. Maybe that residual charge is causing error in measurements. You can also notice that even Agilent LCR meter was a bit off when you brought out another LCR and started measuring first with it and only then with Agilent LCR. You continued talking and didn’t notice the Agilent LCR meter’s error and how it slowly was recovering.