There are of course all kinds of effects, and I'm sure minority mobility factors into one or more of them in some way. I don't think any of them factor into µ though, as that's used for all kinds of basic relationships, like Id, that the various effects then apply to. It makes best sense to me that µ is purely electron mobility in the channel for NFETs and hole mobility in the channel for PFETs; in other words, it needs to be a process-specific constant independent of geometry. (Geometry being factored separately.) If you look at the equations for Ids, it is proportional to µ regardless of whether in linear or saturation mode; this couldn't be true if it weren't simply a constant value for majority mobility in the channel.