Note that you can also have multiple outjob files in a project. This can come in handy if you need data in multiple formats, say one for production and one for documentation.
For example:
Production:
Panel gerbers+drill, ODB++, pdf component placement layers, manufacturing BOM, P&P, assembly drawings
Documentation:
Single board gerbers+drill and OBD++, single board PDF layers, 3D pdf, documentation BOM (different from manufacturing BOM), schematics, PCB step files
I'm sure I missed stuff, but you get the idea. You can also set up output directory structures using variable names, though there are limits to this and the documentation is rather poor. If it's your first go at it, be prepared to spend some time to get it right.
John